Publications

  • Redell J., Liu, Y., and Dash, P. Traumatic Brain Injury Alters Expression of Hippocampal MicroRNAs: Potential Regulators of Multiple Pathophysiological Processes. Journal of Neuroscience Research (in press).

  • Kim, I., Liu, Y., and Zhao, H. Sparsity priors for protein-protein interaction predictions. In: Bayesian Modeling in Bioinformatics (Dey, D., Ghosh S., and Mallick, B., eds.), Chapman & Hall (in press). [Preprint]

  • Liu, Y., Kim, I., and Zhao, H. Protein interaction predictions from diverse sources. Drug Discovery Today (2008), 13: 409-416. [PDF]

  • Kim, I., Liu, Y., and Zhao, H. Bayesian methods for predicting interacting protein pairs using domain information. Biometrics (2007), 63: 824-833. [PDF] [suppl]

  • Liu, Y., Sun, N., Liu, J., Chen, L., McIntosh, M., Zheng, L., and Zhao, H. Identifying stage-specific genes by combining information from two different types of oligonucleotide arrays. Methods of Microarray Data Analysis V (2007), 59-75. [PDF] [web]

  • Liu, Y., Liu, N., and Zhao, H.  Inferring protein-protein interactions through high-throughput interaction data from diverse organisms. Bioinformatics (2005), 21: 3279-3285. [PDF] [web]

  • Liu, Y., and Zhao, H. A computational approach for ordering signal transduction pathway components from genomics and proteomics data. BMC Bioinformatics (2004), 5, 158. [PDF]

  • Zhang, Z., Harrison, P., Liu Y., and Gerstein, M. Millions of years of evolution preserved: a comprehensive catalogue of over 8000 pseudogenes in the human genome. Genome Research (2003), 13:2541-2558.[PDF]